THE HAMMERHEAD RIBOZYME Polymers for Molecular Biology

Whole complex.
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Distances:

RNA H-Head a-helix (19 bp length in Å units)

Dimameter of Double a-Helix (length in Å units)

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The HammerHead Ribozyme Structure for Molecular Biology The RNA HammerHead Complex.
Model Of A Hypothesized Hammerhead Ribozyme Conformational Change. The two subunits of the hammer head symmetric dimer are shown using the Backbone display. The RNA longer sise element is grey; the self-cleavage region is purple; and the short RNA module is red backbone color.

Close-up view of region-RNA interactions in one half-site.
Nucleotides to the RNA bases as follows:
A U/T G C

Show H-bond distances to:

DNA backbone.(Zoom-in to see the individual contacts.)
Viewing tips:
Use the buttons to the right of the image to show only portions of the structure; then use the Chime menu to display or color the molecule. The rotate buttons act on the entire structure. Remove the distance monitors with a second click.

Go to the one-page display of one of these structures: RibozymeHammer359D.html

Back to Structures for Molecular Biology at CMU.

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Coordinates from 1D66.pdb.