| Data retrieval |
- Asymmetric unit, PDB entry: [header only] [complete with coordinates] [Save to disk]
- LPC: Ligand-Protein Contacts for 1DOG
- CSU: Contacts of Structural Units for 1DOG
- Likely Quarternary Molecular Structure file(s) for 1DOG
- Retrieve 1DOG in mmCIF format
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| View 1DOG in 3D |
-
MDL's Chemscape Chime
(Install Chime freeware)
This is good for easiest viewing of basic structure.
- RasMol
(Install RasMol freeware)
Here's help on
how to use RasMol.
|
| Visual 3D analysis of 1DOG |
- STING,
shows the sequence and maps the locations of sequence residues
or residue ranges onto the 3D structure.
-
Noncovalent Bond Finder
displays the closest contacts to ligand or interface, reports
distances, walks over water bridges.
- GRASS
(Graphical Representation and Analysis of Structure Server)
|
| View 1DOG in 2D |
- Topology Diagram from TOPS (The Atlas of protein topology cartoons )
|
| Structure-derived information |
- Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1dog__, region - [rasmolscript] [script source]
- Protein Family Cores from LPFC
- Family: 3gly, Alignment Method: FSSP - Fold representative is 1ayx from Dali/FSSP (Families of Structurally Similar Proteins)
- Domain Definition for 1dog from 3Dee ( The Database of Protein Domain Definitions )
- Class (fold), Architecture (subfold), Topology, Homologous superfamily:
CATH
- Summaries and structural analyses of PDB data files:
PDBSum
|
| Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [1dog_]
- SWISS-PROT database: [AMYG_ASPNG]
- Alignments of the sequence of 1DOG with the sequences
similar proteins can be viewed for classification [AMYG_ASPNG] at ProtoMap.
Click on "Neighbors List", then on the "See Alignments" button below the list.
- A sequence distance tree ("phylogenetic tree")
can be viewed for 1ACL's classification [AMYG_ASPNG] at ProtoMap. Click on the Cluster number.
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| Other resources with information on 1DOG |
- PDBREPORT (protein verification by WHAT_CHECK procedures)
- MMDB (Entrez's Structure Database)
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| Still Images |
- Images
from IMB Jena Image Library
of Biological Macromolecules.
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