Installation Chemistry on Windows platforms

Department of human Physiology and Biochemistry A409 room
Strongly recommended avoid installation Symyx or analogs .pdf Symyx is imperfect
application. No correctly and imposible ISISDraw functions. As well not integrate Work
Parallel with ISISDraw, Chemscape in applications of Word, Exel, Powerpoint .
Compulsory uninstall Symyx and Raswin.exe v.2.7.5.2:
from folders Program Files 32bit addressing,
from folders Program Files (x86) 64 bit addressing.
To erase folders Symyx, Raswin.exe v.2.7.5.2, short cuts and startup.
Some times Symyx, Raswin.exe v.2.7.5.2 are instaled on Internnet explorer, than
you need reinstall Windows on your computer without these aggressive programs.

FireFox.jpgFireFox 3.5.5 HTML and HTM file viewer
   Is provided for combined 3D molecule view together with interactiv tutorials and study texts and employable after installation Chim plugins into plugins folders, which proposed for exact studies and investigations as well as teaching and learning of molecular coordinate files with suffixes _pdb, _.ent, _.xyz, _.rxn, _.tgf, _.mol and others usin Chim java script language. Each Chemscape windows is able to be copied direct from html browsers to ISIS Draw application use and use and investigate any molecular structure for studies.
     Download and install on your computer browserFireFox  FirefoxSetup3.5.5.exe wich have the Status Bar Output Information for Windows .
After installation of browserFireFox of lunched application v.3.5.5 certen denied Internet explorer browser suggestions and set up FireFox as default for FireFox 3.5.5 HTML and HTM file viewer FirefoxSetup3.5.5.exe

3. Download and install in 14 days on trial: Chem scape applications:
FirefoxSetup3.5.5.exe, MAGE6.35, draw24.exe, AN2000.exe, rw32b2a.exe, et.c:
3. Download and install on your computer browser FireFox FirefoxSetup3.5.5.exe wich
have the Status Bar Output Information for Windows . After installation of browser
FireFox of lunched application v.3.5.5 to denied Internet Explorer browser suggestions and
certen set up FireFox as default for FireFox 3.5.5 HTML and HTM file viewer
FirefoxSetup3.5.5.exe
After installation of browser FireFox you need open in menu the Tools in which
choose Options2 : at first use Tabs and mark four box areas with click inside
four boxes v mark fives left empty:

FireFox; Installed Add-ons; Search Engines in menu in which choose Options3
next to Content chose Block pop-up windows and in box areas with click
inside box remove v mark and leave empty.

In menu the Tools in which choose Options7 next to Advanced chose Updates and
in all areas with click three boxes remove v mark and make all three boxes empty.

Options 5 ‘’Never remember history” for safe browsing Home page:.
http://aris.gusc.lv/index.htm
Never
To keep saved Experimental Research studies with FireFox 3.3.5 on menu Quit Firefox use
Save and Quit do not work with Options 5 Pryvacy ”Never remember history”
If you choose button Save and Quit, than next opening will start from tab settings
what Quit before! Not working with option 5 ‘’Never remember history”

Enjoy the Chemistry Research Studies!

For Internet browsing would be suggested Google Chrome with installed Jmol java application. Not recommended Internet Explorer or EDGe for internet browsing for Mac OS platforms. .

Next You need Chim plugins ChemScap Chime tools and related original applications
put five copies (chime.html, chime26.isu, ChimeShim.dll, npchime.dll, NPCHIME.ZIP)
into plugins folders FireFox .
Or not recomended installed MDLChimeSP6.exe automatically in InternetExplorer folder
of
Plugins
and copy into plugins FireFox
from InternetExplorer plugins folder.
Open installed browserFireFox.jpgFireFox and lunch "http://aris.gusc.lv/". Open in menu
the Tools in wich choose Options1 : Main and push the button Use Current Pages
for "Show may home page". Close the Tools "OK" See on first tab window "index.html".
By right button click on http://aris.gusc.lv/Medical Chemistry link menu to open
the second tab window and see the nine tasks in this window. Some links have prefix
htdocsLocal which are perfect lunched from local folder "hfile:///Z:/htdocsLocal/index.html"
evoid use for htdocsLoca home page:"http://aris.gusc.lv/index.html".
Download zipped folders http://aris.gusc.lv/htdocsLocal.zip 1,11 GB,
http://aris.gusc.lv/hhaiDNAmethylCtransferKeny.zip 272,1 MB and
http://aris.gusc.lv/BilipidCholine.zip 241 Mb . Unzip all. Open htdocsLocal: ChemFiles and
move in to folder hhaiDNAmethylCtransferKeny and BilipidCholine.
Local “htdocsLocal” is redy for studies using some links having prefix htdocsLocal.
Open in Firefox third tab and drop in tab Index.html from folder ”htdocsLocal”.
So we are perfect lunched from local folder "hfile:///Z:/htdocsLocal/index.html" for links
having prefix htdocsLocal. Click on Medical Chemistry link menu to open in third tab
the nine tasks. Some links have prefix htdocsLocal. Enjoi it and to study.
Click on link Chemistry_Research open in third tab the tvelv tasks with some links, wich
have prefix htdocsLocal.


ISIS Draw.gif ISIS Draw-Integrated Scientific Information System
      ISIS Draw 2.4 is One perfect stand alone integrated scientific tool in Word2003; Word2007, Exel2003;Exel2007, PowerPoint2003;2007 and
ChemScape ChemScap Plugins in FireFox3.5.5 molecule viewer for editing, design and
proposed for exact studies and investigations as well teaching and learning  of molecular
coordinate files with suffixes _.mol, _.skc, _.tgf, _.rnx, _pdb, _kin. In Protein Science
Journal V1_kins to V5_kins ground application since 1990. Year up to 1996. Year
volumes of issues and National Protein Data Bank official application since 1990. to 2004.
Year. USA, Europe, Japan so on at all Universities of World.
    
Download and install the self extracting installation draw24.exe for  ISIS Draw 2.4
version together with auto nomenclature tool AN2000.exe which may call given
molecular  structure according JUPAC nomenclature.
     Download user guides for its use pdf format  drawuse_nw.pdf for  ISIS Draw 2.4
version and Help file for ISIS DRaw 2.5  help25.exe together with auto nomenclature
tool autonom2000_lic.pdf which help you to use programs.
 

rasIcon2.gif RasWin applications for 3D viewing molecules.
     Is provided for 3D molecule view, editing, design and proposed for exact studies and
investigations as well as
teaching and learning of molecular coordinate files with
suffixes _pdb, _.ent, _.xyz, _.cif, _.mol, _kin.
    
Download and put in Program Files folder (x86) ISIS Draw 2.4 the  program 
rw32b2a.exe (version 2.6 Raswin.exe), program xraswin.exe and program
raswin2721.exe . Copy the name Raswin.exe (version 2.5 Raswin.exe) and  put in trash
old 2.5 version application Raswin.exe and paste the name Raswin.exe on the newer
downloaded file rw32b2a.exe (version 2.6 Raswin.exe). Put on desktop shortcut 
Raswin.exe, because from PDB applications double clic not runnig properly, but
applications.pdb lunches after droping of application PDB file on
Raswin.exe shortcut on desktop very well.
     Download user guides for its use Help file for RasWin    RASWIN.HLP and
RasMol 2.6 command reference card   refcard.pdf and
RasMol tutorials pages  RasTut.htmlTutFiles.html .



Mage.gif MAGE application for research of 3D molecules
     Is for 3D molecules research, editing, design and proposed for exact studies,
teaching , learning, and investigation of molecular coordinate files with
suffixes _.kin.
In Protein Science Journal V1_kins to V5_kins main application since
1990.Year up to 1996.Year volumes of issues and National Proteine Data Bank
official aplication since 1990. to 2004.Year. http://aris.gusc.lv/ChemFiles/Mage54PC/
     Download in folder Program Files for Windows  program  MAGE.exe and
for old platforms MacOs09 MAGE.zip zip file.

As alternative tools, If You like! , are suggested to use four next additional stand alone applications:

MolSoft.gif MolSoft applications for 3D viewing molecules
     Is provided for 3D molecule view, editing, design and proposed for exact teaching ,
learning,  studies and investigation of molecular coordinate files with suffixes
_pdb, _.ent, _.xyz, _.cif, _.mol, _.msv, _.sdf, _.sd, _.mdl, _.car, _.csd,
_.fdat, _.dat, _.msf, _.mol2, _.msi, _.cpd.
    
Download and install for XP2  program  MolSoft.exe and
for MacOsX MolSoft.exe zip file For Mac.
WebLab.gif WebLab viewer v3.5 for 3D molecules
     Is provided for 3D molecule view, editing, design and proposed for exact teaching ,
learning,  studies and investigation of molecular coordinate files with suffixes
_pdb, _.ent, _.xyz, _.cif, _.mol, _.msv, _.sdf, _.sd, _.mdl, _.car, _.csd,
_.fdat, _.dat, _.msf, _.mol2, _.msi, _.cpd.
    
Download and install  program  WLViewerLite35.exe
and  for Macintosh OS9 running platform too
Download and install  program  WLV1168.sit and zip files dna.zip , general.zip ,
inorgan.zip , natural.zip , pharma.zip , protein.zip , SampleMol.zip , smallmol.zip , .
spdbv.jpg SwissPDBviewer v3.7 for 3D viewing molecules
     Is provided for 3D molecule view, editing, design and proposed for exact teaching ,
learning,  studies and investigation of molecular coordinate files with suffixes
_pdb, _.ent, _.xyz, _.cif, _.mol.
     D
ownload zip files and install  program  spdbv37sp5.zip and 
zip files loopdb.zip , manual36.zip , tutorial.zip , DeepViewManual.pdf .